Ish,
Those charts are REALLY interesting. They confirm exactly what I observed in Santa Cruz. I have used a dark-humor approach in describing it as a fat guy sliding down in the tub. There is a massive "slosh" up the end of each inlet, just like when the fat guy slips rapidly down into the tub.
Let me say that the one Really Big Thing I learned from this tsunami is to do what the old timers did - get the hell out of the harbor. They anchored in 100' of water off shore and had a calm, but worrisome day as they watch the masts crashing and listened to the chatter on radio and phone about the destruction of their harbor.
In Santa Cruz we saw a 6 foot peak-to-trough tsunami wave height at the harbor entrance, clearly the wave was feeling bottom as out at the Mile Buoy (apx 1 mile off shore) in 70' of water they only observed about a 1.5 to 2.0 wave with their depth finders. The 6 foot wave started moving up into the harbor (see chart below) and as the flow narrowed the wave height quite naturally increased and the water velocity went way WAY up. Bernoulli's Principal at work, I think. By the time the wave hit the top (north end) of the Harbor the wave was clearly 10 to 12 feet high.
A note on the "wave". It doesn't look like a wave when it's coming in. I just looks like the tide but on a grand a massively faster scale. At the bridge in the middle of the chart below the water dropped to at least a -7 Below MLW (the bridge has a scale mounted on it and -7 is as low as it goes, the water level was about 3-4 feet below that. This resulted in well over 1/2 the Harbor having no water in it at all.
The destruction was caused by the relatively high frequency of the wave(s). There were at least 10 "waves" of significant height in the tsunami, and the first one wasn't the largest, the 4th or 5th one was; another mis-conception I had about the "wave". The frequency was about 1 peak every 10 to 15 minutes.
What this resulted in was the Harbor draining by about 70% (of the volume) over the course of about 3-4 minutes, a pause of about a minute, then the Harbor re-filled in about 1-2 minutes!

That means that the current flowing in through the harbor was between 10 and 15 knots at times near the narrow bits. When it struck boats beam on it heeled the powerboats over a bit, but it grabbed the keels of sailboats and simply flipped them on their sides. This was quite dramatic as the rigs crashed down on adjacent boats, dismasting the flipped boat, and if the flow of water managed to catch the lip of the hull/deck joint it would roll the boat all the way over. The boats that were sunk we typically beam to the current flow or were pinned to something (like the bridge) and driven underwater by the flow rate.
Photo Gallery (including many from yours truly) of the tsunami is here:
http://www.santacruzharbor.org/tsunamiphotoGallery.html Photo #4 illustrates the roll-over that the current caused for sailboats caught abeam to the flow.
In the map below, North is to the right. Japan, obviously is off to the top of the drawing, but the water came around the 90° corner and into the harbor without any trouble at all. This is, obviously, because it's not a "wave" as we normally think of one, but is simply a very VERY large incoming tide where the water level rises by many many feet and then falls again about once every 10-15 minutes.
